@incollection{Gaw17,
author = {Gawthrop, Peter J.},
editor = {Borutzky, Wolfgang},
title = {Bond-Graph Modelling and Causal Analysis of Biomolecular Systems},
booktitle = {Bond Graphs for Modelling, Control and Fault Diagnosis of Engineering Systems},
year = {2017},
publisher = {Springer International Publishing},
address = {Berlin},
pages = {587--623},
isbn = {978-3-319-47434-2},
doi = {10.1007/978-3-319-47434-2_16},
abstract = {Bond graph modelling of the biomolecular systems of living
organisms is introduced. Molecular species are
represented by non-linear C components and reactions
by non-linear two-port R components. As living
systems are neither at thermodynamic equilibrium nor
closed, open and non-equilibrium systems are
considered and illustrated using examples of
biomolecular systems. Open systems are modelled
using chemostats: chemical species with fixed
concentration. In addition to their role in ensuring
that models are energetically correct, bond graphs
provide a powerful and natural way of representing
and analysing causality. Causality is used in this
chapter to examine the properties of the junction
structures of biomolecular systems and how they
relate to biomolecular concepts.}
}
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